PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115733.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 438aa    MW: 46600 Da    PI: 9.9547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-056486123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_009115733.1 64 FVCEICNKGFQRDQNLQLHRRGH 86
                    89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.55E-76386No hitNo description
SMARTSM003550.0176486IPR015880Zinc finger, C2H2-like
PfamPF121716.8E-56486IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355250105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.55E-7135160No hitNo description
SMARTSM00355180140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MKMPVDLDKS STVSGEASVS STGNQQNPLP KSAAKKKRNL PGMPDPNSEV IALSPKTLLA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQKSSQEV KKKVYVCPET SCVHHDPSRA  120
LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VVSDWKAHSK ICGTKEYKCD CGTLFSRRDS  180
FMTHRAFCDA LAEESVRSHT HGKKQSPEIL TRKKPVPDPK PSLAAAPVET QPAIAIKRPE  240
SPKTPREVLQ ETQEPTGLNG VYFDSSSASP SIYASSCSQS LFAPSSSIEP ISLGLSTSHG  300
PSFLCSPRFP SQPAMSATAL LQKAAQMGAA SSGGSLLRGL GIVSSTSPSM DSIVPNGLAL  360
GLPCGGESSS GLKELMMGNS SVFGPKQTTL DFLGLGRAVG NGGGPGSTLA GPRGGSIDAL  420
ATFGSGEFSG NDIGRRTS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.137420.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532100.0AK353210.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-D18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115733.10.0PREDICTED: zinc finger protein JACKDAW
RefseqXP_009115732.10.0PREDICTED: zinc finger protein JACKDAW
SwissprotQ9SCQ60.0IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLM4F4U40.0M4F4U4_BRARP; Uncharacterized protein
STRINGBra036098.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2